Package: TFMPvalue 1.0.0

Ge Tan

TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.

Authors:Ge Tan [aut, cre]

TFMPvalue_1.0.0.tar.gz
TFMPvalue_1.0.0.zip(r-4.7)TFMPvalue_1.0.0.zip(r-4.6)TFMPvalue_1.0.0.zip(r-4.5)
TFMPvalue_1.0.0.tgz(r-4.6-x86_64)TFMPvalue_1.0.0.tgz(r-4.6-arm64)TFMPvalue_1.0.0.tgz(r-4.5-x86_64)TFMPvalue_1.0.0.tgz(r-4.5-arm64)
TFMPvalue_1.0.0.tar.gz(r-4.7-arm64)TFMPvalue_1.0.0.tar.gz(r-4.7-x86_64)TFMPvalue_1.0.0.tar.gz(r-4.6-arm64)TFMPvalue_1.0.0.tar.gz(r-4.6-x86_64)
TFMPvalue_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
TFMPvalue/json (API)

# Install 'TFMPvalue' in R:
install.packages('TFMPvalue', repos = c('https://ge11232002.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ge11232002/tfmpvalue/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

6.31 score 2 stars 19 packages 15 scripts 4.0k downloads 3 mentions 3 exports 1 dependencies

Last updated from:ddc1173d1e. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK133
linux-devel-x86_64OK130
source / vignettesOK164
linux-release-arm64OK133
linux-release-x86_64OK107
macos-release-arm64OK143
macos-release-x86_64OK278
macos-oldrel-arm64OK160
macos-oldrel-x86_64OK387
windows-develOK100
windows-releaseOK89
windows-oldrelOK82
wasm-releaseOK100

Exports:TFMLazyScoreTFMpv2scTFMsc2pv

Dependencies:Rcpp