Package: TFMPvalue 1.0.0
Ge Tan
TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices
In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
Authors:
TFMPvalue_1.0.0.tar.gz
TFMPvalue_1.0.0.zip(r-4.7-x86_64)TFMPvalue_1.0.0.zip(r-4.7-arm64)TFMPvalue_1.0.0.zip(r-4.6-x86_64)TFMPvalue_1.0.0.zip(r-4.6-arm64)TFMPvalue_1.0.0.zip(r-4.5-x86_64)
TFMPvalue_1.0.0.tgz(r-4.6-x86_64)TFMPvalue_1.0.0.tgz(r-4.6-arm64)TFMPvalue_1.0.0.tgz(r-4.5-x86_64)TFMPvalue_1.0.0.tgz(r-4.5-arm64)
TFMPvalue_1.0.0.tar.gz(r-4.7-arm64)TFMPvalue_1.0.0.tar.gz(r-4.7-x86_64)TFMPvalue_1.0.0.tar.gz(r-4.6-arm64)TFMPvalue_1.0.0.tar.gz(r-4.6-x86_64)
TFMPvalue_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
TFMPvalue/json (API)
| # Install 'TFMPvalue' in R: |
| install.packages('TFMPvalue', repos = c('https://ge11232002.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ge11232002/tfmpvalue/issues
Last updated from:ddc1173d1e. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 104 | ||
| linux-devel-x86_64 | OK | 119 | ||
| source / vignettes | OK | 147 | ||
| linux-release-arm64 | OK | 102 | ||
| linux-release-x86_64 | OK | 116 | ||
| macos-release-arm64 | OK | 136 | ||
| macos-release-x86_64 | OK | 210 | ||
| macos-oldrel-arm64 | OK | 99 | ||
| macos-oldrel-x86_64 | OK | 389 | ||
| windows-devel-arm64 | OK | 332 | ||
| windows-devel-x86_64 | OK | 127 | ||
| windows-release-arm64 | OK | 338 | ||
| windows-release-x86_64 | OK | 67 | ||
| windows-oldrel-x86_64 | OK | 93 | ||
| wasm-release | OK | 119 |
Exports:TFMLazyScoreTFMpv2scTFMsc2pv
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Efficient and accurate P-value computation for Position Weight Matrices | TFMPvalue-package |
| Compute the score from P-value. | TFMLazyScore |
| Compute score from P-value. | TFMpv2sc |
| Compute P-value from score. | TFMsc2pv |