Package: TFMPvalue 0.0.9

Ge Tan

TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.

Authors:Ge Tan <[email protected]>

TFMPvalue_0.0.9.tar.gz
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TFMPvalue.pdf |TFMPvalue.html✨
TFMPvalue/json (API)

# Install 'TFMPvalue' in R:
install.packages('TFMPvalue', repos = c('https://ge11232002.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ge11232002/tfmpvalue/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

6.01 score 2 stars 20 packages 13 scripts 4.4k downloads 3 mentions 3 exports 1 dependencies

Last updated 2 years agofrom:df20083cfb. Checks:1 OK, 11 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 21 2025
R-4.5-win-x86_64NOTEMar 21 2025
R-4.5-mac-x86_64NOTEMar 21 2025
R-4.5-mac-aarch64NOTEMar 21 2025
R-4.5-linux-x86_64NOTEMar 21 2025
R-4.4-win-x86_64NOTEMar 21 2025
R-4.4-mac-x86_64NOTEMar 21 2025
R-4.4-mac-aarch64NOTEMar 21 2025
R-4.4-linux-x86_64NOTEMar 21 2025
R-4.3-win-x86_64NOTEMar 21 2025
R-4.3-mac-x86_64NOTEMar 21 2025
R-4.3-mac-aarch64NOTEMar 21 2025

Exports:TFMLazyScoreTFMpv2scTFMsc2pv

Dependencies:Rcpp